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ERX1623037: Illumina MiSeq sequencing; qiita_ptid_1752:10481.Hans.3.34.2
1 ILLUMINA (Illumina MiSeq) run: 140,815 spots, 42.1M bases, 15Mb downloads

Design: The spatial relationship of productivity and microbiome diversity in a laboratory cultivated photosynthetic mat
Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)
Study: Trade-offs between microbiome diversity and productivity in a stratified microbial mat
show Abstracthide Abstract
Productivity is a major determinant of ecosystem diversity. Microbial ecosystems are the most diverse on the planet yet very few relationships between diversity and productivity have been reported as compared to macro-ecological studies. Here we evaluated the spatial relationships of productivity and microbiome diversity in a laboratory-cultivated photosynthetic mat. The goal was to determine how spatial diversification of microorganisms drives localized carbon and energy acquisition rates. We measured sub-millimeter depth profiles of net primary-productivity and gross oxygenic photosynthesis in the context of the localized microenvironment and community structure and observed negative correlations between species richness and productivity within the energy-replete, photic zone. Variations between localized community structures were associated with distinct taxa as well as environmental profiles describing a continuum of biological niches. Spatial regions in the photic zone corresponding to high primary productivity and photosynthesis rates had relatively low species richness and high evenness. Hence, this system exhibited negative species-productivity and species–energy relationships. These negative relationships may be indicative of stratified, light-driven microbial ecosystems that are able to be the most productive with a relatively smaller, even distributions of species that specialize within photic zones.
Sample: Trade-offs between microbiome diversity and productivity in a stratified microbial mat; 10481.Hans.3.34.2
SAMEA4359569 • ERS1271018 • All experiments • All runs
Library:
Name: 10481.Hans.3.34.2
Instrument: Illumina MiSeq
Strategy: OTHER
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Construction protocol: 16S v4 300 bp paired end reads with full overlap and overhang see 10.3389/fmicb.2013.00323
Experiment attributes: (show all 4 attributes...) (hide...)
center_name: JOINT GENOME INSTITUTE
inputfilename: Hans_3_34_2.fasta
primer: GTGCCAGCMGCCGCGGTAA
run_prefix: Hans_3_34_2.m
Runs: 1 run, 140,815 spots, 42.1M bases, 15Mb
Run# of Spots# of BasesSizePublished
ERR1552281140,81542.1M15Mb2016-08-01

ID:
2866526

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